wiki:lista_sw
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Table of Contents
List of software installed on IBISCO
The software list is varying and updated as other software packages are installed
General utilities for the use of the system
| Package | Ver, position, note |
|---|---|
| Midnight Commander (mc) | Simple file manager working in semigraphic form in characters in a terminal window |
General software for development (compilers, libraries, etc)
| Package | Ver, position, note |
|---|---|
| Intel OneAPI (compiler suites, libraries, etc provided by Intel) | |
| NVIDIA HPC SDK (compiler suites, libraries, etc provided by NVIDIA | Ver 20.10 - available in the directory /nfsexports/SOFTWARE/nvidia/hpc_sdk/ |
| OpenMPI | Ver 4.1.orc5 - configured to have CUDA-AWARE, available in the directory /usr/mpi/gcc/openmpi-4.1.0rc5/ |
| Julia language | Ver 1.6.1 - interpreter available in the directory /nfsexports/SOFTWARE/julia-1.6.1 |
| FFTW libraries | ver 3.3.10 - compiled with Intel compiler available in the directory /nfsexports/SOFTWARE/fftw-3.3.10 |
| Anaconda 3 environment | available in the directory /nfsexports/SOFTWARE/anaconda3.OK/ |
| Gestore containers Singularity | |
| Graphviz | |
| Red Hat Developer Toolset | devtoolset-9, devtoolset-10, devtoolset-11 |
| gmsh | Ver 4.10.1 - available in the directory /nfsexports/SOFTWARE/gmsh-4.10.1-source/install/bin |
| java | Ver 8 |
| java | Ver 11.0.13 available in the bioconda environment of conda |
Complete software packages for specific applications
| Package | Ver, posizione, note |
|---|---|
| Matlab | Ver R2020b - available in the directory /nfsexports/SOFTWARE/MATLAB/R2020b/bin |
| Quantum ESPRESSO | Ver 7.0 - available in the directory /nfsexports/SOFTWARE/qe-7.0 |
| OpenFOAM | Ver 7.0 - available in the directory /nfsexports/SOFTWARE/OpenFOAM-7.0/ |
| OpenFOAM | Ver 9.0 - available in the directory /nfsexports/SOFTWARE/OpenFOAM-9.0/ |
| Rheotool | Ver 5.0 - available in the same directory as OpenFOAM |
| R | available in the directory /nfsexports/SOFTWARE/R-4.1.3 |
Tools in a conda environment
About the tools available in the conda environment that are accessible in the directory
/nfsexports/SOFTWARE/anaconda3/, see following list (which contains: python version 3, pytorch, tensorflow, nextflow)
# /nfsexports/SOFTWARE/anaconda3/bin/conda list
# packages in environment at /nfsexports/SOFTWARE/anaconda3:
| Name | Version |
|---|---|
| _anaconda_depends | 2020.07 |
| _ipyw_jlab_nb_ext_conf | 0.1.0 |
| _libgcc_mutex | 0.1 |
| absl-py | 1.0.0 |
| alabaster | 0.7.12 |
| anaconda | custom |
| anaconda-client | 1.7.2 |
| anaconda-navigator | 1.10.0 |
| anaconda-project | 0.8.4 |
| argh | 0.26.2 |
| argon2-cffi | 20.1.0 |
| asn1crypto | 1.4.0 |
| astroid | 2.4.2 |
| astropy | 4.0.2 |
| astunparse | 1.6.3 |
| async_generator | 1.10 |
| atomicwrites | 1.4.0 |
| attrs | 20.3.0 |
| autopep8 | 1.5.4 |
| babel | 2.8.1 |
| backcall | 0.2.0 |
| backports | 1.0 |
| backports.functools_lru_cache | 1.6.1 |
| backports.shutil_get_terminal_size | 1.0.0 |
| backports.tempfile | 1.0 |
| backports.weakref | 1.0.post1 |
| beautifulsoup4 | 4.9.3 |
| bitarray | 1.6.1 |
| bkcharts | 0.2 |
| blas | 1.0 |
| bleach | 3.2.1 |
| blosc | 1.20.1 |
| bokeh | 2.2.3 |
| boto | 2.49.0 |
| bottleneck | 1.3.2 |
| brotlipy | 0.7.0 |
| bzip2 | 1.0.8 |
| ca-certificates | 2022.3.29 |
| cachetools | 5.0.0 |
| cairo | 1.14.12 |
| certifi | 2021.10.8 |
| cffi | 1.14.3 |
| chardet | 3.0.4 |
| click | 7.1.2 |
| cloudpickle | 1.6.0 |
| clyent | 1.2.2 |
| colorama | 0.4.4 |
| conda | 4.12.0 |
| conda-build | 3.20.5 |
| conda-env | 2.6.0 |
| conda-package-handling | 1.7.2 |
| conda-verify | 3.4.2 |
| contextlib2 | 0.6.0.post1 |
| cryptography | 3.1.1 |
| curl | 7.71.1 |
| cycler | 0.10.0 |
| cython | 0.29.21 |
| cytoolz | 0.11.0 |
| dask | 2.30.0 |
| dask-core | 2.30.0 |
| dbus | 1.13.18 |
| deap | 1.3.1 |
| decorator | 4.4.2 |
| defusedxml | 0.6.0 |
| diff-match-patch | 20200713 |
| distributed | 2.30.1 |
| docutils | 0.16 |
| entrypoints | 0.3 |
| et_xmlfile | 1.0.1 |
| expat | 2.2.10 |
| fastcache | 1.1.0 |
| filelock | 3.0.12 |
| flake8 | 3.8.4 |
| flask | 1.1.2 |
| flatbuffers | 2.0 |
| fontconfig | 2.13.0 |
| freetype | 2.10.4 |
| fribidi | 1.0.10 |
| fsspec | 0.8.3 |
| future | 0.18.2 |
| gast | 0.5.3 |
| get_terminal_size | 1.0.0 |
| gevent | 20.9.0 |
| glib | 2.66.1 |
| glob2 | 0.7 |
| gmp | 6.1.2 |
| gmpy2 | 2.0.8 |
| google-auth | 2.6.3 |
| google-auth-oauthlib | 0.4.6 |
| google-pasta | 0.2.0 |
| graphite2 | 1.3.14 |
| greenlet | 0.4.17 |
| grpcio | 1.44.0 |
| gst-plugins-base | 1.14.0 |
| gstreamer | 1.14.0 |
| h5py | 2.10.0 |
| harfbuzz | 2.4.0 |
| hdf5 | 1.10.4 |
| heapdict | 1.0.1 |
| html5lib | 1.1 |
| icu | 58.2 |
| idna | 2.10 |
| imageio | 2.9.0 |
| imagesize | 1.2.0 |
| importlib-metadata | 4.11.3 |
| importlib_metadata | 2.0.0 |
| iniconfig | 1.1.1 |
| intel-openmp | 2020.2 |
| intervaltree | 3.1.0 |
| ipykernel | 5.3.4 |
| ipython | 7.19.0 |
| ipython_genutils | 0.2.0 |
| ipywidgets | 7.5.1 |
| isort | 5.6.4 |
| itsdangerous | 1.1.0 |
| jbig | 2.1 |
| jdcal | 1.4.1 |
| jedi | 0.17.1 |
| jeepney | 0.5.0 |
| jinja2 | 2.11.2 |
| joblib | 0.17.0 |
| jpeg | 9b |
| json5 | 0.9.5 |
| jsonschema | 3.2.0 |
| jupyter | 1.0.0 |
| jupyter_client | 6.1.7 |
| jupyter_console | 6.2.0 |
| jupyter_core | 4.6.3 |
| jupyterlab | 2.2.6 |
| jupyterlab_pygments | 0.1.2 |
| jupyterlab_server | 1.2.0 |
| keras | 2.8.0 |
| keras-preprocessing | 1.1.2 |
| keyring | 21.4.0 |
| kiwisolver | 1.3.0 |
| krb5 | 1.18.2 |
| lazy-object-proxy | 1.4.3 |
| lcms2 | 2.11 |
| ld_impl_linux-64 | 2.33.1 |
| libarchive | 3.4.2 |
| libclang | 13.0.0 |
| libcurl | 7.71.1 |
| libedit | 3.1.20191231 |
| libffi | 3.3 |
| libgcc-ng | 9.1.0 |
| libgfortran-ng | 7.3.0 |
| liblief | 0.10.1 |
| libllvm10 | 10.0.1 |
| libllvm9 | 9.0.1 |
| libpng | 1.6.37 |
| libsodium | 1.0.18 |
| libspatialindex | 1.9.3 |
| libssh2 | 1.9.0 |
| libstdcxx-ng | 9.1.0 |
| libtiff | 4.1.0 |
| libtool | 2.4.6 |
| libuuid | 1.0.3 |
| libxcb | 1.14 |
| libxml2 | 2.9.10 |
| libxslt | 1.1.34 |
| llvmlite | 0.34.0 |
| locket | 0.2.0 |
| lxml | 4.6.1 |
| lz4-c | 1.9.2 |
| lzo | 2.10 |
| markdown | 3.3.6 |
| markupsafe | 1.1.1 |
| matplotlib | 3.3.2 |
| matplotlib-base | 3.3.2 |
| mccabe | 0.6.1 |
| mistune | 0.8.4 |
| mkl | 2020.2 |
| mkl-service | 2.3.0 |
| mkl_fft | 1.2.0 |
| mkl_random | 1.1.1 |
| mock | 4.0.2 |
| more-itertools | 8.6.0 |
| mpc | 1.1.0 |
| mpfr | 4.0.2 |
| mpmath | 1.1.0 |
| msgpack-python | 1.0.0 |
| multipledispatch | 0.6.0 |
| navigator-updater | 0.2.1 |
| nbclient | 0.5.1 |
| nbconvert | 6.0.7 |
| nbformat | 5.0.8 |
| ncurses | 6.2 |
| nest-asyncio | 1.4.2 |
| networkx | 2.5 |
| nextflow | 0.2.2 |
| nltk | 3.5 |
| nose | 1.3.7 |
| notebook | 6.1.4 |
| numba | 0.51.2 |
| numexpr | 2.7.1 |
| numpy | 1.22.3 |
| numpy-base | 1.19.2 |
| numpydoc | 1.1.0 |
| oauthlib | 3.2.0 |
| olefile | 0.46 |
| openpyxl | 3.0.5 |
| openssl | 1.1.1n |
| opt-einsum | 3.3.0 |
| packaging | 20.4 |
| pandas | 1.1.3 |
| pandoc | 2.11 |
| pandocfilters | 1.4.3 |
| pango | 1.45.3 |
| parso | 0.7.0 |
| partd | 1.1.0 |
| patchelf | 0.12 |
| path | 15.0.0 |
| path.py | 12.5.0 |
| pathlib2 | 2.3.5 |
| pathtools | 0.1.2 |
| patsy | 0.5.1 |
| pcre | 8.44 |
| pep8 | 1.7.1 |
| pexpect | 4.8.0 |
| pickleshare | 0.7.5 |
| pillow | 8.0.1 |
| pip | 21.2.4 |
| pixman | 0.40.0 |
| pkginfo | 1.6.1 |
| pluggy | 0.13.1 |
| ply | 3.11 |
| prometheus_client | 0.8.0 |
| prompt-toolkit | 3.0.8 |
| prompt_toolkit | 3.0.8 |
| protobuf | 3.20.0 |
| psutil | 5.7.2 |
| ptyprocess | 0.6.0 |
| py | 1.9.0 |
| py-lief | 0.10.1 |
| pyasn1 | 0.4.8 |
| pyasn1-modules | 0.2.8 |
| pycodestyle | 2.6.0 |
| pycosat | 0.6.3 |
| pycparser | 2.20 |
| pycurl | 7.43.0.6 |
| pydocstyle | 5.1.1 |
| pyflakes | 2.2.0 |
| pygments | 2.7.2 |
| pylint | 2.6.0 |
| pyodbc | 4.0.30 |
| pyopenssl | 19.1.0 |
| pyparsing | 2.4.7 |
| pyqt | 5.9.2 |
| pyrsistent | 0.17.3 |
| pysocks | 1.7.1 |
| pytables | 3.6.1 |
| pytest | 6.1.1 |
| python | 3.8.5 |
| python-dateutil | 2.8.1 |
| python-jsonrpc-server | 0.4.0 |
| python-language-server | 0.35.1 |
| python-libarchive-c | 2.9 |
| python_abi | 3.8 |
| pytz | 2020.1 |
| pywavelets | 1.1.1 |
| pyxdg | 0.27 |
| pyyaml | 5.3.1 |
| pyzmq | 19.0.2 |
| qdarkstyle | 2.8.1 |
| qt | 5.9.7 |
| qtawesome | 1.0.1 |
| qtconsole | 4.7.7 |
| qtpy | 1.9.0 |
| qutip | 4.5.2 |
| readline | 8.0 |
| regex | 2020.10.15 |
| requests | 2.24.0 |
| requests-oauthlib | 1.3.1 |
| ripgrep | 12.1.1 |
| rope | 0.18.0 |
| rsa | 4.8 |
| rtree | 0.9.4 |
| ruamel_yaml | 0.15.87 |
| scikit-image | 0.17.2 |
| scikit-learn | 0.23.2 |
| scipy | 1.5.2 |
| seaborn | 0.11.0 |
| secretstorage | 3.1.2 |
| send2trash | 1.5.0 |
| setuptools | 50.3.1 |
| simplegeneric | 0.8.1 |
| singledispatch | 3.4.0.3 |
| sip | 4.19.13 |
| six | 1.15.0 |
| snappy | 1.1.8 |
| snowballstemmer | 2.0.0 |
| sortedcollections | 1.2.1 |
| sortedcontainers | 2.2.2 |
| soupsieve | 2.0.1 |
| sphinx | 3.2.1 |
| sphinxcontrib | 1.0 |
| sphinxcontrib-applehelp | 1.0.2 |
| sphinxcontrib-devhelp | 1.0.2 |
| sphinxcontrib-htmlhelp | 1.0.3 |
| sphinxcontrib-jsmath | 1.0.1 |
| sphinxcontrib-qthelp | 1.0.3 |
| sphinxcontrib-serializinghtml | 1.1.4 |
| sphinxcontrib-websupport | 1.2.4 |
| spyder | 4.1.5 |
| spyder-kernels | 1.9.4 |
| sqlalchemy | 1.3.20 |
| sqlite | 3.33.0 |
| statsmodels | 0.12.0 |
| sympy | 1.6.2 |
| tbb | 2020.3 |
| tblib | 1.7.0 |
| tensorboard | 2.8.0 |
| tensorboard-data-server | 0.6.1 |
| tensorboard-plugin-wit | 1.8.1 |
| tensorflow | 2.8.0 |
| tensorflow-io-gcs-filesystem | 0.24.0 |
| termcolor | 1.1.0 |
| terminado | 0.9.1 |
| testpath | 0.4.4 |
| tf-estimator-nightly | 2.8.0.dev2021122109 |
| threadpoolctl | 2.1.0 |
| tifffile | 2020.10.1 |
| tk | 8.6.10 |
| toml | 0.10.1 |
| toolz | 0.11.1 |
| torch | 1.11.0 |
| tornado | 6.0.4 |
| tqdm | 4.50.2 |
| traitlets | 5.0.5 |
| typing_extensions | 3.7.4.3 |
| ujson | 4.0.1 |
| unicodecsv | 0.14.1 |
| unixodbc | 2.3.9 |
| urllib3 | 1.25.11 |
| watchdog | 0.10.3 |
| wcwidth | 0.2.5 |
| webencodings | 0.5.1 |
| werkzeug | 1.0.1 |
| wheel | 0.35.1 |
| widgetsnbextension | 3.5.1 |
| wrapt | 1.11.2 |
| wurlitzer | 2.0.1 |
| xlrd | 1.2.0 |
| xlsxwriter | 1.3.7 |
| xlwt | 1.3.0 |
| xmltodict | 0.12.0 |
| xz | 5.2.5 |
| yaml | 0.2.5 |
| yapf | 0.30.0 |
| zeromq | 4.3.3 |
| zict | 2.0.0 |
| zipp | 3.4.0 |
| zlib | 1.2.11 |
| zope | 1.0 |
| zope.event | 4.5.0 |
| zope.interface | 5.1.2 |
| zstd | 1.4.5 |
wiki/lista_sw.1656527916.txt.gz · Last modified: 2022/06/29 18:38 by phegde
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