wiki:lista_sw
Table of Contents
List of software installed on IBISCO
The software list is varying and updated as other software packages are installed
General utilities for the use of the system
| Package | Ver, position, note |
|---|---|
| Midnight Commander (mc) | Simple file manager working in semigraphic form in characters in a terminal window |
General software for development (compilers, libraries, etc)
| Package | Ver, position, note |
|---|---|
| Intel OneAPI (compiler suites, libraries, etc provided by Intel) | |
| NVIDIA HPC SDK (compiler suites, libraries, etc provided by NVIDIA | Ver 20.10 - available in the directory /nfsexports/SOFTWARE/nvidia/hpc_sdk/ |
| OpenMPI | Ver 4.1.orc5 - configured to have CUDA-AWARE, available in the directory /usr/mpi/gcc/openmpi-4.1.0rc5/ |
| Julia language | Ver 1.6.1 - interpreter available in the directory /nfsexports/SOFTWARE/julia-1.6.1 |
| FFTW libraries | ver 3.3.10 - compiled with Intel compiler available in the directory /nfsexports/SOFTWARE/fftw-3.3.10 |
| Anaconda 3 environment | available in the directory /nfsexports/SOFTWARE/anaconda3.OK/ |
| Gestore containers Singularity | |
| Graphviz | |
| Red Hat Developer Toolset | devtoolset-9, devtoolset-10, devtoolset-11 |
| gmsh | Ver 4.10.1 - available in the directory /nfsexports/SOFTWARE/gmsh-4.10.1-source/install/bin |
| java | Ver 8 |
| java | Ver 11.0.13 available in the bioconda environment of conda |
Complete software packages for specific applications
| Package | Ver, posizione, note |
|---|---|
| Matlab | Ver R2020b - available in the directory /nfsexports/SOFTWARE/MATLAB/R2020b/bin |
| Matlab | Ver R2022a - available in the directory /nfsexports/SOFTWARE/MATLAB/R2022a/bin |
| Quantum ESPRESSO | Ver 7.0 - available in the directory /nfsexports/SOFTWARE/qe-7.0 |
| OpenFOAM | Ver 7.0 - available in the directory /nfsexports/SOFTWARE/OpenFOAM-7.0/ |
| OpenFOAM | Ver 9.0 - available in the directory /nfsexports/SOFTWARE/OpenFOAM-9.0/ |
| Rheotool | Ver 5.0 - available in the same directory as OpenFOAM |
| R | available in the directory /nfsexports/SOFTWARE/R-4.1.3 |
Tools in a conda environment
About the tools available in the conda environment that are accessible in the directory
/nfsexports/SOFTWARE/anaconda3.OK/, see following list (which contains: python version 3, pytorch, tensorflow, nextflow)
( command to list: # /nfsexports/SOFTWARE/anaconda3.OK/bin/conda list )
# packages in environment at /nfsexports/SOFTWARE/anaconda3.OK:
| Name | Version |
|---|---|
| _anaconda_depends | 2020.07 |
| _ipyw_jlab_nb_ext_conf | 0.1.0 |
| _libgcc_mutex | 0.1 |
| absl-py | 1.0.0 |
| alabaster | 0.7.12 |
| anaconda | custom |
| anaconda-client | 1.7.2 |
| anaconda-navigator | 1.10.0 |
| anaconda-project | 0.8.4 |
| argh | 0.26.2 |
| argon2-cffi | 20.1.0 |
| asn1crypto | 1.4.0 |
| astroid | 2.4.2 |
| astropy | 4.0.2 |
| astunparse | 1.6.3 |
| async_generator | 1.10 |
| atomicwrites | 1.4.0 |
| attrs | 20.3.0 |
| autopep8 | 1.5.4 |
| babel | 2.8.1 |
| backcall | 0.2.0 |
| backports | 1.0 |
| backports.functools_lru_cache | 1.6.1 |
| backports.shutil_get_terminal_size | 1.0.0 |
| backports.tempfile | 1.0 |
| backports.weakref | 1.0.post1 |
| beautifulsoup4 | 4.9.3 |
| bitarray | 1.6.1 |
| bkcharts | 0.2 |
| blas | 1.0 |
| bleach | 3.2.1 |
| blosc | 1.20.1 |
| bokeh | 2.2.3 |
| boto | 2.49.0 |
| bottleneck | 1.3.2 |
| brotlipy | 0.7.0 |
| bzip2 | 1.0.8 |
| ca-certificates | 2022.3.29 |
| cachetools | 5.0.0 |
| cairo | 1.14.12 |
| certifi | 2021.10.8 |
| cffi | 1.14.3 |
| chardet | 3.0.4 |
| click | 7.1.2 |
| cloudpickle | 1.6.0 |
| clyent | 1.2.2 |
| colorama | 0.4.4 |
| conda | 4.12.0 |
| conda-build | 3.20.5 |
| conda-env | 2.6.0 |
| conda-package-handling | 1.7.2 |
| conda-verify | 3.4.2 |
| contextlib2 | 0.6.0.post1 |
| cryptography | 3.1.1 |
| curl | 7.71.1 |
| cycler | 0.10.0 |
| cython | 0.29.21 |
| cytoolz | 0.11.0 |
| dask | 2.30.0 |
| dask-core | 2.30.0 |
| dbus | 1.13.18 |
| deap | 1.3.1 |
| decorator | 4.4.2 |
| defusedxml | 0.6.0 |
| diff-match-patch | 20200713 |
| distributed | 2.30.1 |
| docutils | 0.16 |
| entrypoints | 0.3 |
| et_xmlfile | 1.0.1 |
| expat | 2.2.10 |
| fastcache | 1.1.0 |
| filelock | 3.0.12 |
| flake8 | 3.8.4 |
| flask | 1.1.2 |
| flatbuffers | 2.0 |
| fontconfig | 2.13.0 |
| freetype | 2.10.4 |
| fribidi | 1.0.10 |
| fsspec | 0.8.3 |
| future | 0.18.2 |
| gast | 0.5.3 |
| get_terminal_size | 1.0.0 |
| gevent | 20.9.0 |
| glib | 2.66.1 |
| glob2 | 0.7 |
| gmp | 6.1.2 |
| gmpy2 | 2.0.8 |
| google-auth | 2.6.3 |
| google-auth-oauthlib | 0.4.6 |
| google-pasta | 0.2.0 |
| graphite2 | 1.3.14 |
| greenlet | 0.4.17 |
| grpcio | 1.44.0 |
| gst-plugins-base | 1.14.0 |
| gstreamer | 1.14.0 |
| h5py | 2.10.0 |
| harfbuzz | 2.4.0 |
| hdf5 | 1.10.4 |
| heapdict | 1.0.1 |
| html5lib | 1.1 |
| icu | 58.2 |
| idna | 2.10 |
| imageio | 2.9.0 |
| imagesize | 1.2.0 |
| importlib-metadata | 4.11.3 |
| importlib_metadata | 2.0.0 |
| iniconfig | 1.1.1 |
| intel-openmp | 2020.2 |
| intervaltree | 3.1.0 |
| ipykernel | 5.3.4 |
| ipython | 7.19.0 |
| ipython_genutils | 0.2.0 |
| ipywidgets | 7.5.1 |
| isort | 5.6.4 |
| itsdangerous | 1.1.0 |
| jbig | 2.1 |
| jdcal | 1.4.1 |
| jedi | 0.17.1 |
| jeepney | 0.5.0 |
| jinja2 | 2.11.2 |
| joblib | 0.17.0 |
| jpeg | 9b |
| json5 | 0.9.5 |
| jsonschema | 3.2.0 |
| jupyter | 1.0.0 |
| jupyter_client | 6.1.7 |
| jupyter_console | 6.2.0 |
| jupyter_core | 4.6.3 |
| jupyterlab | 2.2.6 |
| jupyterlab_pygments | 0.1.2 |
| jupyterlab_server | 1.2.0 |
| keras | 2.8.0 |
| keras-preprocessing | 1.1.2 |
| keyring | 21.4.0 |
| kiwisolver | 1.3.0 |
| krb5 | 1.18.2 |
| lazy-object-proxy | 1.4.3 |
| lcms2 | 2.11 |
| ld_impl_linux-64 | 2.33.1 |
| libarchive | 3.4.2 |
| libclang | 13.0.0 |
| libcurl | 7.71.1 |
| libedit | 3.1.20191231 |
| libffi | 3.3 |
| libgcc-ng | 9.1.0 |
| libgfortran-ng | 7.3.0 |
| liblief | 0.10.1 |
| libllvm10 | 10.0.1 |
| libllvm9 | 9.0.1 |
| libpng | 1.6.37 |
| libsodium | 1.0.18 |
| libspatialindex | 1.9.3 |
| libssh2 | 1.9.0 |
| libstdcxx-ng | 9.1.0 |
| libtiff | 4.1.0 |
| libtool | 2.4.6 |
| libuuid | 1.0.3 |
| libxcb | 1.14 |
| libxml2 | 2.9.10 |
| libxslt | 1.1.34 |
| llvmlite | 0.34.0 |
| locket | 0.2.0 |
| lxml | 4.6.1 |
| lz4-c | 1.9.2 |
| lzo | 2.10 |
| markdown | 3.3.6 |
| markupsafe | 1.1.1 |
| matplotlib | 3.3.2 |
| matplotlib-base | 3.3.2 |
| mccabe | 0.6.1 |
| mistune | 0.8.4 |
| mkl | 2020.2 |
| mkl-service | 2.3.0 |
| mkl_fft | 1.2.0 |
| mkl_random | 1.1.1 |
| mock | 4.0.2 |
| more-itertools | 8.6.0 |
| mpc | 1.1.0 |
| mpfr | 4.0.2 |
| mpmath | 1.1.0 |
| msgpack-python | 1.0.0 |
| multipledispatch | 0.6.0 |
| navigator-updater | 0.2.1 |
| nbclient | 0.5.1 |
| nbconvert | 6.0.7 |
| nbformat | 5.0.8 |
| ncurses | 6.2 |
| nest-asyncio | 1.4.2 |
| networkx | 2.5 |
| nextflow | 0.2.2 |
| nltk | 3.5 |
| nose | 1.3.7 |
| notebook | 6.1.4 |
| numba | 0.51.2 |
| numexpr | 2.7.1 |
| numpy | 1.22.3 |
| numpy-base | 1.19.2 |
| numpydoc | 1.1.0 |
| oauthlib | 3.2.0 |
| olefile | 0.46 |
| openpyxl | 3.0.5 |
| openssl | 1.1.1n |
| opt-einsum | 3.3.0 |
| packaging | 20.4 |
| pandas | 1.1.3 |
| pandoc | 2.11 |
| pandocfilters | 1.4.3 |
| pango | 1.45.3 |
| parso | 0.7.0 |
| partd | 1.1.0 |
| patchelf | 0.12 |
| path | 15.0.0 |
| path.py | 12.5.0 |
| pathlib2 | 2.3.5 |
| pathtools | 0.1.2 |
| patsy | 0.5.1 |
| pcre | 8.44 |
| pep8 | 1.7.1 |
| pexpect | 4.8.0 |
| phonopy | 2.8.1 |
| pickleshare | 0.7.5 |
| pillow | 8.0.1 |
| pip | 21.2.4 |
| pixman | 0.40.0 |
| pkginfo | 1.6.1 |
| pluggy | 0.13.1 |
| ply | 3.11 |
| prometheus_client | 0.8.0 |
| prompt-toolkit | 3.0.8 |
| prompt_toolkit | 3.0.8 |
| protobuf | 3.20.0 |
| psutil | 5.7.2 |
| ptyprocess | 0.6.0 |
| py | 1.9.0 |
| py-lief | 0.10.1 |
| pyasn1 | 0.4.8 |
| pyasn1-modules | 0.2.8 |
| pycodestyle | 2.6.0 |
| pycosat | 0.6.3 |
| pycparser | 2.20 |
| pycurl | 7.43.0.6 |
| pydocstyle | 5.1.1 |
| pyflakes | 2.2.0 |
| pygments | 2.7.2 |
| pylint | 2.6.0 |
| pyodbc | 4.0.30 |
| pyopenssl | 19.1.0 |
| pyparsing | 2.4.7 |
| pyqt | 5.9.2 |
| pyrsistent | 0.17.3 |
| pysocks | 1.7.1 |
| pytables | 3.6.1 |
| pytest | 6.1.1 |
| python | 3.8.5 |
| python-dateutil | 2.8.1 |
| python-jsonrpc-server | 0.4.0 |
| python-language-server | 0.35.1 |
| python-libarchive-c | 2.9 |
| python_abi | 3.8 |
| pytz | 2020.1 |
| pywavelets | 1.1.1 |
| pyxdg | 0.27 |
| pyyaml | 5.3.1 |
| pyzmq | 19.0.2 |
| qdarkstyle | 2.8.1 |
| qt | 5.9.7 |
| qtawesome | 1.0.1 |
| qtconsole | 4.7.7 |
| qtpy | 1.9.0 |
| qutip | 4.5.2 |
| readline | 8.0 |
| regex | 2020.10.15 |
| requests | 2.24.0 |
| requests-oauthlib | 1.3.1 |
| ripgrep | 12.1.1 |
| rope | 0.18.0 |
| rsa | 4.8 |
| rtree | 0.9.4 |
| ruamel_yaml | 0.15.87 |
| scikit-image | 0.17.2 |
| scikit-learn | 0.23.2 |
| scipy | 1.5.2 |
| seaborn | 0.11.0 |
| secretstorage | 3.1.2 |
| send2trash | 1.5.0 |
| setuptools | 50.3.1 |
| simplegeneric | 0.8.1 |
| singledispatch | 3.4.0.3 |
| sip | 4.19.13 |
| six | 1.15.0 |
| snappy | 1.1.8 |
| snowballstemmer | 2.0.0 |
| sortedcollections | 1.2.1 |
| sortedcontainers | 2.2.2 |
| soupsieve | 2.0.1 |
| sphinx | 3.2.1 |
| sphinxcontrib | 1.0 |
| sphinxcontrib-applehelp | 1.0.2 |
| sphinxcontrib-devhelp | 1.0.2 |
| sphinxcontrib-htmlhelp | 1.0.3 |
| sphinxcontrib-jsmath | 1.0.1 |
| sphinxcontrib-qthelp | 1.0.3 |
| sphinxcontrib-serializinghtml | 1.1.4 |
| sphinxcontrib-websupport | 1.2.4 |
| spyder | 4.1.5 |
| spyder-kernels | 1.9.4 |
| sqlalchemy | 1.3.20 |
| sqlite | 3.33.0 |
| statsmodels | 0.12.0 |
| sympy | 1.6.2 |
| tbb | 2020.3 |
| tblib | 1.7.0 |
| tensorboard | 2.8.0 |
| tensorboard-data-server | 0.6.1 |
| tensorboard-plugin-wit | 1.8.1 |
| tensorflow | 2.8.0 |
| tensorflow-io-gcs-filesystem | 0.24.0 |
| termcolor | 1.1.0 |
| terminado | 0.9.1 |
| testpath | 0.4.4 |
| tf-estimator-nightly | 2.8.0.dev2021122109 |
| threadpoolctl | 2.1.0 |
| tifffile | 2020.10.1 |
| tk | 8.6.10 |
| toml | 0.10.1 |
| toolz | 0.11.1 |
| torch | 1.11.0 |
| tornado | 6.0.4 |
| tqdm | 4.50.2 |
| traitlets | 5.0.5 |
| typing_extensions | 3.7.4.3 |
| ujson | 4.0.1 |
| unicodecsv | 0.14.1 |
| unixodbc | 2.3.9 |
| urllib3 | 1.25.11 |
| watchdog | 0.10.3 |
| wcwidth | 0.2.5 |
| webencodings | 0.5.1 |
| werkzeug | 1.0.1 |
| wheel | 0.35.1 |
| widgetsnbextension | 3.5.1 |
| wrapt | 1.11.2 |
| wurlitzer | 2.0.1 |
| xlrd | 1.2.0 |
| xlsxwriter | 1.3.7 |
| xlwt | 1.3.0 |
| xmltodict | 0.12.0 |
| xz | 5.2.5 |
| yaml | 0.2.5 |
| yapf | 0.30.0 |
| zeromq | 4.3.3 |
| zict | 2.0.0 |
| zipp | 3.4.0 |
| zlib | 1.2.11 |
| zope | 1.0 |
| zope.event | 4.5.0 |
| zope.interface | 5.1.2 |
| zstd | 1.4.5 |
wiki/lista_sw.txt · Last modified: 2022/07/25 20:46 by cnr-guest
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